IL_8PV6_063

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_063 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.2286

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8PV6|1|C1|G|1598
8PV6|1|C1|A|1599
8PV6|1|C1|U|1600
8PV6|1|C1|G|1601
*
8PV6|1|C1|C|1804
8PV6|1|C1|G|1805
8PV6|1|C1|C|1806

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CJ

Pescadillo homolog

Chain Ce

Ribosome biogenesis protein NOP53

Chain Lk

60S ribosomal protein L38-like protein