IL_8PV6_088

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8PV6|1|C1|A|2205, 8PV6|1|C1|A|2206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_088 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1012

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8PV6|1|C1|U|2163
8PV6|1|C1|G|2164
*
8PV6|1|C1|U|2204
8PV6|1|C1|A|2205
8PV6|1|C1|A|2206
8PV6|1|C1|A|2207

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain Cd

Nucleolar GTP-binding protein 2

Chain LA

60S ribosomal protein L2-like protein