IL_8PV6_101

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_101 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.1607

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8PV6|1|C1|G|2429
8PV6|1|C1|G|2430
8PV6|1|C1|A|2431
8PV6|1|C1|G|2432
*
8PV6|1|C1|C|2439
8PV6|1|C1|G|2440
8PV6|1|C1|C|2441
8PV6|1|C1|C|2442
8PV6|1|C1|A|2443
8PV6|1|C1|G|2444
8PV6|1|C1|U|2445
8PV6|1|C1|G|2446
8PV6|1|C1|A|2447
8PV6|1|C1|A|2448
8PV6|1|C1|A|2449
8PV6|1|C1|U|2450
8PV6|1|C1|A|2451
8PV6|1|C1|C|2452

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain CW

Pre-rRNA-processing protein RIX1

Chain Lr

Ribosomal protein