IL_8PV6_129

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_129 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.246

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8PV6|1|C1|U|3241
8PV6|1|C1|U|3242
8PV6|1|C1|U|3243
8PV6|1|C1|G|3244
*
8PV6|1|C1|C|3252
8PV6|1|C1|U|3253
8PV6|1|C1|U|3254
8PV6|1|C1|A|3255

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Ld

Putative 60S ribosomal protein