IL_8PV6_141

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CA*UUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_141 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2326

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8PV6|1|C4|C|26
8PV6|1|C4|A|27
*
8PV6|1|C4|U|53
8PV6|1|C4|U|54
8PV6|1|C4|A|55
8PV6|1|C4|A|56
8PV6|1|C4|G|57

Current chains

Chain C4

5S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein

Chain LJ

Putative ribosomal protein