IL_8PV7_154

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

GCAC*GUC

Length

7 nucleotides

Bulged bases

8PV7|1|C1|C|2584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_154 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.2835

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8PV7|1|C1|G|2583
8PV7|1|C1|C|2584
8PV7|1|C1|A|2585
8PV7|1|C1|C|2586
*
8PV7|1|C1|G|2610
8PV7|1|C1|U|2611
8PV7|1|C1|C|2612

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cf

Ribosome production factor 2 homolog

Chain Cg

Ribosome biogenesis regulatory protein

Chain LJ

Putative ribosomal protein

Chain LT

60S ribosomal protein l21-like protein