IL_8PV8_002
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8PV8|1|C2|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_002 not in the Motif Atlas
- Geometric match to IL_5TBW_002
- Geometric discrepancy: 0.2316
- The information below is about IL_5TBW_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
8PV8|1|C1|C|8
8PV8|1|C1|C|9
*
8PV8|1|C2|G|150
8PV8|1|C2|C|151
8PV8|1|C2|G|152
Current chains
- Chain C1
- 26S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
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