IL_8PV8_104
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_104 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.1323
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8PV8|1|C1|C|2625
8PV8|1|C1|A|2626
8PV8|1|C1|U|2627
*
8PV8|1|C1|A|2645
8PV8|1|C1|G|2646
8PV8|1|C1|U|2647
8PV8|1|C1|A|2648
8PV8|1|C1|G|2649
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain Cz
- rRNA-processing protein
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
- Chain LT
- 60S ribosomal protein l21-like protein
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