IL_8PV8_107

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

8PV8|1|C1|U|2730, 8PV8|1|C1|C|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV8_107 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1242

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8PV8|1|C1|G|2729
8PV8|1|C1|U|2730
8PV8|1|C1|C|2731
8PV8|1|C1|C|2732
*
8PV8|1|C1|G|2746
8PV8|1|C1|C|2747

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein