IL_8PV8_143
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- GUUAGUAG*CGAAUCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_143 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.3073
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8PV8|1|C4|G|72
8PV8|1|C4|U|73
8PV8|1|C4|U|74
8PV8|1|C4|A|75
8PV8|1|C4|G|76
8PV8|1|C4|U|77
8PV8|1|C4|A|78
8PV8|1|C4|G|79
*
8PV8|1|C4|C|99
8PV8|1|C4|G|100
8PV8|1|C4|A|101
8PV8|1|C4|A|102
8PV8|1|C4|U|103
8PV8|1|C4|C|104
8PV8|1|C4|C|105
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CL
- Putative GTP binding protein
- Chain Cz
- rRNA-processing protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LS
- 60S ribosomal protein L20
Coloring options: