IL_8PVA_013

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8PVA|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_013 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1004

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8PVA|1|A|G|147
8PVA|1|A|G|148
8PVA|1|A|A|149
8PVA|1|A|U|150
8PVA|1|A|A|151
8PVA|1|A|A|152
8PVA|1|A|C|153
*
8PVA|1|A|G|168
8PVA|1|A|C|169
8PVA|1|A|U|170
8PVA|1|A|A|171
8PVA|1|A|A|172
8PVA|1|A|U|173
8PVA|1|A|A|174
8PVA|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20