IL_8PVA_060

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8PVA|1|A|C|1400, 8PVA|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_060 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0664

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8PVA|1|A|C|1399
8PVA|1|A|C|1400
8PVA|1|A|G|1401
*
8PVA|1|A|C|1501
8PVA|1|A|A|1502
8PVA|1|A|A|1503
8PVA|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain X

mRNA

Chain Z

Transfer RNA; tRNA