IL_8PVA_061
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- G(4OC)CC*G(UR3)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVA_061 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.0808
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PVA|1|A|G|1401
8PVA|1|A|4OC|1402
8PVA|1|A|C|1403
8PVA|1|A|C|1404
*
8PVA|1|A|G|1497
8PVA|1|A|UR3|1498
8PVA|1|A|A|1499
8PVA|1|A|A|1500
8PVA|1|A|C|1501
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: