IL_8PVA_075

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_075 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0569

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8PVA|1|a|C|239
8PVA|1|a|C|240
8PVA|1|a|A|241
8PVA|1|a|G|242
8PVA|1|a|U|243
8PVA|1|a|A|244
8PVA|1|a|G|245
*
8PVA|1|a|C|253
8PVA|1|a|G|254
8PVA|1|a|A|255
8PVA|1|a|A|256
8PVA|1|a|C|257
8PVA|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15