3D structure

PDB id
8PVA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial ribosome determined by cryoEM at 100 keV
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8PVA|1|a|G|801, 8PVA|1|a|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PVA_085 not in the Motif Atlas
Geometric match to IL_5J7L_260
Geometric discrepancy: 0.0582
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8PVA|1|a|G|674
8PVA|1|a|A|675
8PVA|1|a|A|676
8PVA|1|a|A|677
8PVA|1|a|C|678
*
8PVA|1|a|G|799
8PVA|1|a|A|800
8PVA|1|a|G|801
8PVA|1|a|A|802
8PVA|1|a|U|803
8PVA|1|a|A|804
8PVA|1|a|G|805
8PVA|1|a|C|806

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
Large ribosomal subunit protein uL4
Chain k
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2849 s