IL_8PVA_134

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_134 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1368

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8PVA|1|a|U|1720
8PVA|1|a|G|1721
8PVA|1|a|A|1722
8PVA|1|a|G|1723
8PVA|1|a|G|1724
*
8PVA|1|a|U|1736
8PVA|1|a|G|1737
8PVA|1|a|G|1738
8PVA|1|a|A|1739
8PVA|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains