IL_8PVA_184

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_184 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0312

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8PVA|1|a|G|1666
8PVA|1|a|G|1667
8PVA|1|a|A|1668
8PVA|1|a|A|1669
8PVA|1|a|C|1670
8PVA|1|a|U|1671
8PVA|1|a|A|1672
8PVA|1|a|G|1673
8PVA|1|a|G|1674
*
8PVA|1|a|C|1990
8PVA|1|a|U|1991
8PVA|1|a|G|1992
8PVA|1|a|U|1993
8PVA|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

50S ribosomal protein L14