IL_8PVA_185

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0658

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8PVA|1|a|U|1851
8PVA|1|a|U|1852
8PVA|1|a|A|1853
8PVA|1|a|A|1854
8PVA|1|a|U|1855
8PVA|1|a|U|1856
8PVA|1|a|G|1857
8PVA|1|a|A|1858
8PVA|1|a|U|1859
8PVA|1|a|G|1860
*
8PVA|1|a|U|1882
8PVA|1|a|U|1883
8PVA|1|a|G|1884
8PVA|1|a|A|1885
8PVA|1|a|U|1886
8PVA|1|a|C|1887
8PVA|1|a|G|1888
8PVA|1|a|A|1889
8PVA|1|a|A|1890
8PVA|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains