IL_8PVK_013

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUC*GUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_013 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.1685

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8PVK|1|C1|C|176
8PVK|1|C1|U|177
8PVK|1|C1|U|178
8PVK|1|C1|C|179
*
8PVK|1|C1|G|226
8PVK|1|C1|U|227
8PVK|1|C1|U|228
8PVK|1|C1|G|229

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain LY

60S ribosomal protein L26-like protein

Chain Lj

Ribosomal protein L37