IL_8PVK_040

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_040 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.3252

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8PVK|1|C1|A|979
8PVK|1|C1|A|980
*
8PVK|1|C1|U|1033
8PVK|1|C1|U|1034
8PVK|1|C1|U|1035

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CL

Putative GTP binding protein

Chain LS

60S ribosomal protein L20