IL_8PVK_065
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- UUUGC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 8PVK|1|C1|U|1609, 8PVK|1|C1|U|1795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_065 not in the Motif Atlas
- Homologous match to IL_5TBW_066
- Geometric discrepancy: 0.1597
- The information below is about IL_5TBW_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48431.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PVK|1|C1|U|1607
8PVK|1|C1|U|1608
8PVK|1|C1|U|1609
8PVK|1|C1|G|1610
8PVK|1|C1|C|1611
*
8PVK|1|C1|G|1791
8PVK|1|C1|G|1792
8PVK|1|C1|A|1793
8PVK|1|C1|A|1794
8PVK|1|C1|U|1795
8PVK|1|C1|A|1796
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LZ
- 60S ribosomal protein L27
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