IL_8PVK_079
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8PVK|1|C1|A|1911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_079 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1003
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8PVK|1|C1|C|1898
8PVK|1|C1|G|1899
8PVK|1|C1|U|1900
8PVK|1|C1|A|1901
8PVK|1|C1|A|1902
8PVK|1|C1|C|1903
*
8PVK|1|C1|G|1908
8PVK|1|C1|G|1909
8PVK|1|C1|A|1910
8PVK|1|C1|A|1911
8PVK|1|C1|A|1912
8PVK|1|C1|A|1913
8PVK|1|C1|G|1914
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cb
- Zinc finger domain-containing protein
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cf
- Ribosome production factor 2 homolog
- Chain Lp
- 60S ribosomal protein L43-like protein
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