IL_8PVK_090
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_090 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1339
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PVK|1|C1|U|2174
8PVK|1|C1|C|2175
8PVK|1|C1|A|2176
8PVK|1|C1|A|2177
8PVK|1|C1|A|2178
8PVK|1|C1|G|2179
8PVK|1|C1|U|2180
*
8PVK|1|C1|A|2191
8PVK|1|C1|A|2192
8PVK|1|C1|C|2193
8PVK|1|C1|C|2194
8PVK|1|C1|A|2195
8PVK|1|C1|A|2196
8PVK|1|C1|G|2197
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain Li
- 60S ribosomal protein L36
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