IL_8PVK_101

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_101 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.233

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8PVK|1|C1|G|2429
8PVK|1|C1|G|2430
8PVK|1|C1|A|2431
8PVK|1|C1|G|2432
*
8PVK|1|C1|C|2439
8PVK|1|C1|G|2440
8PVK|1|C1|C|2441
8PVK|1|C1|C|2442
8PVK|1|C1|A|2443
8PVK|1|C1|G|2444
8PVK|1|C1|U|2445
8PVK|1|C1|G|2446
8PVK|1|C1|A|2447
8PVK|1|C1|A|2448
8PVK|1|C1|A|2449
8PVK|1|C1|U|2450
8PVK|1|C1|A|2451
8PVK|1|C1|C|2452

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain Lr

Ribosomal protein