IL_8PVK_119

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8PVK|1|C1|A|3100, 8PVK|1|C1|C|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_119 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0723

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8PVK|1|C1|C|2962
8PVK|1|C1|A|2963
8PVK|1|C1|A|2964
8PVK|1|C1|U|2965
*
8PVK|1|C1|A|3097
8PVK|1|C1|G|3098
8PVK|1|C1|A|3099
8PVK|1|C1|A|3100
8PVK|1|C1|C|3101
8PVK|1|C1|G|3102

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein