IL_8PVK_125
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- AUAAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 8PVK|1|C1|A|3088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_125 not in the Motif Atlas
- Homologous match to IL_8C3A_129
- Geometric discrepancy: 0.096
- The information below is about IL_8C3A_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8PVK|1|C1|A|3061
8PVK|1|C1|U|3062
8PVK|1|C1|A|3063
8PVK|1|C1|A|3064
8PVK|1|C1|U|3065
*
8PVK|1|C1|A|3085
8PVK|1|C1|G|3086
8PVK|1|C1|A|3087
8PVK|1|C1|A|3088
8PVK|1|C1|U|3089
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain CO
- DUF2423 domain-containing protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
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