IL_8PVK_143

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GACC*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_143 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.2354

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8PVK|1|C3|G|32
8PVK|1|C3|A|33
8PVK|1|C3|C|34
8PVK|1|C3|C|35
*
8PVK|1|C3|G|50
8PVK|1|C3|G|51
8PVK|1|C3|C|52

Current chains

Chain C3

ITS2

Nearby chains

Chain CB

Utp30

Chain CI

Putative RNA-binding protein