IL_8PVL_032

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVL_032 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8PVL|1|C1|U|816
8PVL|1|C1|G|817
8PVL|1|C1|A|818
8PVL|1|C1|A|819
8PVL|1|C1|G|820
*
8PVL|1|C1|U|837
8PVL|1|C1|G|838
8PVL|1|C1|G|839
8PVL|1|C1|A|840
8PVL|1|C1|G|841

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LR

Ribosomal protein L19

Chain Lp

60S ribosomal protein L43-like protein