IL_8PVL_060
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- UGAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 8PVL|1|C1|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVL_060 not in the Motif Atlas
- Geometric match to IL_4LFB_037
- Geometric discrepancy: 0.3613
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_61370.1
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8PVL|1|C1|U|1484
8PVL|1|C1|G|1485
8PVL|1|C1|A|1486
8PVL|1|C1|A|1487
8PVL|1|C1|C|1488
*
8PVL|1|C1|G|1496
8PVL|1|C1|G|1497
8PVL|1|C1|A|1498
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LR
- Ribosomal protein L19
- Chain Ll
- Ribosomal protein eL39
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