IL_8PVL_085

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8PVL|1|C1|U|2122, 8PVL|1|C1|U|2138, 8PVL|1|C1|C|2142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVL_085 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1464

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8PVL|1|C1|C|2119
8PVL|1|C1|G|2120
8PVL|1|C1|A|2121
8PVL|1|C1|U|2122
8PVL|1|C1|G|2123
8PVL|1|C1|G|2124
*
8PVL|1|C1|U|2136
8PVL|1|C1|G|2137
8PVL|1|C1|U|2138
8PVL|1|C1|U|2139
8PVL|1|C1|G|2140
8PVL|1|C1|A|2141
8PVL|1|C1|C|2142
8PVL|1|C1|G|2143

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Lp

60S ribosomal protein L43-like protein