IL_8PVL_090

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVL_090 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1135

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8PVL|1|C1|U|2174
8PVL|1|C1|C|2175
8PVL|1|C1|A|2176
8PVL|1|C1|A|2177
8PVL|1|C1|A|2178
8PVL|1|C1|G|2179
8PVL|1|C1|U|2180
*
8PVL|1|C1|A|2191
8PVL|1|C1|A|2192
8PVL|1|C1|C|2193
8PVL|1|C1|C|2194
8PVL|1|C1|A|2195
8PVL|1|C1|A|2196
8PVL|1|C1|G|2197

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain Li

60S ribosomal protein L36