IL_8PVL_116

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8PVL|1|C1|A|3100, 8PVL|1|C1|C|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVL_116 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0757

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8PVL|1|C1|C|2962
8PVL|1|C1|A|2963
8PVL|1|C1|A|2964
8PVL|1|C1|U|2965
*
8PVL|1|C1|A|3097
8PVL|1|C1|G|3098
8PVL|1|C1|A|3099
8PVL|1|C1|A|3100
8PVL|1|C1|C|3101
8PVL|1|C1|G|3102

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein