IL_8Q4F_038

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8Q4F|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_038 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1299

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8Q4F|1|A|U|662
8Q4F|1|A|A|663
8Q4F|1|A|G|664
8Q4F|1|A|A|665
8Q4F|1|A|G|666
*
8Q4F|1|A|U|740
8Q4F|1|A|G|741
8Q4F|1|A|G|742
8Q4F|1|A|A|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6, fully modified isoform

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18