3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
8Q4F|1|A|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_047 not in the Motif Atlas
Homologous match to IL_5J7L_041
Geometric discrepancy: 0.2014
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8Q4F|1|A|G|933
8Q4F|1|A|C|934
8Q4F|1|A|A|935
*
8Q4F|1|A|U|1380
8Q4F|1|A|U|1381
8Q4F|1|A|C|1382
8Q4F|1|A|C|1383
8Q4F|1|A|C|1384

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
Small ribosomal subunit protein uS7
Chain I
Small ribosomal subunit protein uS9

Coloring options:


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