IL_8Q4F_055

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8Q4F|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_055 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1617

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8Q4F|1|A|U|1052
8Q4F|1|A|G|1053
8Q4F|1|A|C|1054
8Q4F|1|A|A|1055
8Q4F|1|A|U|1056
*
8Q4F|1|A|A|1204
8Q4F|1|A|U|1205
8Q4F|1|A|G|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14