IL_8Q4F_067

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8Q4F|1|A|A|1492, 8Q4F|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_067 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2837

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8Q4F|1|A|C|1407
8Q4F|1|A|A|1408
8Q4F|1|A|C|1409
*
8Q4F|1|A|G|1491
8Q4F|1|A|A|1492
8Q4F|1|A|A|1493
8Q4F|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain a

Large subunit ribosomal RNA; LSU rRNA