IL_8Q4F_070

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGU*AUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_070 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.211

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8Q4F|1|A|G|1421
8Q4F|1|A|G|1422
8Q4F|1|A|G|1423
8Q4F|1|A|U|1424
*
8Q4F|1|A|A|1476
8Q4F|1|A|U|1477
8Q4F|1|A|U|1478
8Q4F|1|A|C|1479

Current chains

Chain A

16S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain j

Large ribosomal subunit protein uL14