IL_8Q4F_081
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_081 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.1329
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8Q4F|1|a|C|239
8Q4F|1|a|C|240
8Q4F|1|a|A|241
8Q4F|1|a|G|242
8Q4F|1|a|U|243
8Q4F|1|a|A|244
8Q4F|1|a|G|245
*
8Q4F|1|a|C|253
8Q4F|1|a|G|254
8Q4F|1|a|A|255
8Q4F|1|a|A|256
8Q4F|1|a|C|257
8Q4F|1|a|G|258
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: