3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUAAC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_093 not in the Motif Atlas
Homologous match to IL_5J7L_258
Geometric discrepancy: 0.181
The information below is about IL_5J7L_258
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8Q4F|1|a|U|606
8Q4F|1|a|U|607
8Q4F|1|a|A|608
8Q4F|1|a|A|609
8Q4F|1|a|C|610
*
8Q4F|1|a|G|618
8Q4F|1|a|G|619
8Q4F|1|a|G|620
8Q4F|1|a|A|621
8Q4F|1|a|G|622

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
Large ribosomal subunit protein uL4
Chain k
Large ribosomal subunit protein uL15

Coloring options:


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