IL_8Q4F_095

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8Q4F|1|a|G|801, 8Q4F|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_095 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1294

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8Q4F|1|a|G|674
8Q4F|1|a|A|675
8Q4F|1|a|A|676
8Q4F|1|a|A|677
8Q4F|1|a|C|678
*
8Q4F|1|a|G|799
8Q4F|1|a|A|800
8Q4F|1|a|G|801
8Q4F|1|a|A|802
8Q4F|1|a|U|803
8Q4F|1|a|A|804
8Q4F|1|a|G|805
8Q4F|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15