IL_8Q4F_104

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_104 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2151

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8Q4F|1|a|A|849
8Q4F|1|a|U|850
8Q4F|1|a|C|851
*
8Q4F|1|a|G|926
8Q4F|1|a|A|927
8Q4F|1|a|A|928
8Q4F|1|a|U|929

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein uL30