3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_107 not in the Motif Atlas
Homologous match to IL_5J7L_272
Geometric discrepancy: 0.1256
The information below is about IL_5J7L_272
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

8Q4F|1|a|G|864
8Q4F|1|a|C|865
8Q4F|1|a|A|866
8Q4F|1|a|C|867
8Q4F|1|a|U|868
*
8Q4F|1|a|A|909
8Q4F|1|a|A|910
8Q4F|1|a|A|911
8Q4F|1|a|C|912

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
50S ribosomal protein L16

Coloring options:


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