IL_8Q4F_111

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_111 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.3081

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8Q4F|1|a|G|882
8Q4F|1|a|G|883
8Q4F|1|a|U|884
8Q4F|1|a|C|885
*
8Q4F|1|a|G|891
8Q4F|1|a|A|892
8Q4F|1|a|C|893
8Q4F|1|a|U|894

Current chains

Chain a

23S rRNA

Nearby chains