IL_8Q4F_117

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

8Q4F|1|a|A|1127, 8Q4F|1|a|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_117 not in the Motif Atlas

Geometric match to IL_4WF9_040

Geometric discrepancy: 0.1146

The information below is about IL_4WF9_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8Q4F|1|a|G|1024
8Q4F|1|a|G|1025
8Q4F|1|a|G|1026
8Q4F|1|a|A|1027
8Q4F|1|a|A|1028
8Q4F|1|a|A|1029
8Q4F|1|a|C|1030
*
8Q4F|1|a|G|1124
8Q4F|1|a|G|1125
8Q4F|1|a|A|1126
8Q4F|1|a|A|1127
8Q4F|1|a|G|1128
8Q4F|1|a|A|1129
8Q4F|1|a|U|1130
8Q4F|1|a|G|1131
8Q4F|1|a|U|1132
8Q4F|1|a|A|1133
8Q4F|1|a|A|1134
8Q4F|1|a|C|1135
8Q4F|1|a|G|1136
8Q4F|1|a|G|1137
8Q4F|1|a|G|1138
8Q4F|1|a|G|1139
8Q4F|1|a|C|1140

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain b

5S ribosomal RNA; 5S rRNA

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13

Chain l

50S ribosomal protein L16