IL_8Q4F_124

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8Q4F|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_124 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1221

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8Q4F|1|a|C|1208
8Q4F|1|a|U|1209
8Q4F|1|a|G|1210
8Q4F|1|a|C|1211
8Q4F|1|a|G|1212
8Q4F|1|a|A|1213
8Q4F|1|a|A|1214
8Q4F|1|a|G|1215
*
8Q4F|1|a|U|1234
8Q4F|1|a|G|1235
8Q4F|1|a|G|1236
8Q4F|1|a|A|1237
8Q4F|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20