3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAC*GUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: AAC,GUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_163 not in the Motif Atlas
Geometric match to IL_4LFB_061
Geometric discrepancy: 0.128
The information below is about IL_4LFB_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

8Q4F|1|a|A|2094
8Q4F|1|a|A|2095
8Q4F|1|a|C|2096
*
8Q4F|1|a|G|2193
8Q4F|1|a|U|2194
8Q4F|1|a|U|2195

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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