IL_8Q4F_164

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGA*UUG

Length

7 nucleotides

Bulged bases

8Q4F|1|a|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_164 not in the Motif Atlas

Geometric match to IL_5M0H_002

Geometric discrepancy: 0.2933

The information below is about IL_5M0H_002

Detailed Annotation

Multiple bulged bases, near cWW

Broad Annotation

Multiple bulged bases, near cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8Q4F|1|a|U|2202
8Q4F|1|a|U|2203
8Q4F|1|a|G|2204
8Q4F|1|a|A|2205
*
8Q4F|1|a|U|2219
8Q4F|1|a|U|2220
8Q4F|1|a|G|2221

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28