3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CA*UACG
Length
6 nucleotides
Bulged bases
8Q4F|1|a|A|2572, 8Q4F|1|a|C|2573
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_173 not in the Motif Atlas
Geometric match to IL_4WF9_096
Geometric discrepancy: 0.1721
The information below is about IL_4WF9_096
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

8Q4F|1|a|C|2512
8Q4F|1|a|A|2513
*
8Q4F|1|a|U|2571
8Q4F|1|a|A|2572
8Q4F|1|a|C|2573
8Q4F|1|a|G|2574

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain i
Large ribosomal subunit protein uL13

Coloring options:


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