IL_8Q4F_202

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCU*AAGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_202 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.365

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8Q4F|1|A|U|657
8Q4F|1|A|C|658
8Q4F|1|A|U|659
*
8Q4F|1|A|A|746
8Q4F|1|A|A|747
8Q4F|1|A|G|748
8Q4F|1|A|A|749

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS15