IL_8Q4F_214
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAG*CGGCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_214 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3129
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8Q4F|1|a|G|1037
8Q4F|1|a|G|1038
8Q4F|1|a|A|1039
8Q4F|1|a|A|1040
8Q4F|1|a|G|1041
*
8Q4F|1|a|C|1114
8Q4F|1|a|G|1115
8Q4F|1|a|G|1116
8Q4F|1|a|C|1117
8Q4F|1|a|C|1118
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L16
- Chain u
- Large ribosomal subunit protein bL25
Coloring options: